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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA61G00595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 28017.4 Da PI: 7.9647 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd ll d+++ +G g+W++ +++ g++R++k+c++rw +yl AA61G00595 14 RGRWTAEEDRLLSDYIHSYGDGSWRSLPKKAGLKRCGKSCRLRWINYL 61 8*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.6e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+el+v+++ +G++ W++Ia++++ gRt++++k++w+++l AA61G00595 67 RGNITQEEEELIVKLHSSYGNR-WSLIASKLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.666 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.17E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.50E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.257 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.92E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRAPCCEKV GMKRGRWTAE EDRLLSDYIH SYGDGSWRSL PKKAGLKRCG KSCRLRWINY 60 LREDVKRGNI TQEEEELIVK LHSSYGNRWS LIASKLPGRT DNEIKNYWNS HLSRKLHYFM 120 RKSTVKKSFI SPPLPKSKST QETKNGAVSV SIPAEKKAYE DSEPARGSID QNENDLFVDR 180 NFDRRDSQNL WHGNEALDDL FVDRNVDTRE SQNLRDGNER LDDLVLSWLL EGEEDLLDLW 240 P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402364.1 | 2e-78 | hypothetical protein EUTSA_v10006080mg | ||||
Swissprot | O22264 | 2e-74 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | V4LMW4 | 2e-78 | V4LMW4_EUTSA; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__2983__AT2G47460.1 | 4e-72 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 2e-75 | myb domain protein 12 |